set up variant graph for parent grain reconstruction
Description
The weights of the graph are computed from a cumulative Gaussian distribution with mean given by the option 'threshold'
and variance given by the option 'tolerance'
. The options 'C2C'
and 'P2C'
may be used to restrict the graph to specific neighborhood relationships. The option mergeSimilar
creates a variant graph that does not distinguish between similar variants.
Syntax
Input
job | parentGrainReconstructor |
Output
job.graph | adjacency matrix of the graph |
Options
threshold | misfit at which the probability is set to 0.5, default is 2 degree |
tolerance | range around the threshold where the probability increases from 0 to 1 |
C2C | consider only child to child grain boundaries |
P2C | consider only parent to child grain boundaries |
mergeSimilar | merge similar variants in the graph |